Difference between revisions of "Transsys Installation"

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== Test ==
 
== Test ==
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You can test whether the installation was successful by trying the command
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  transexpr testdata/check.tra
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in the <code>transsys-current</code> directory. You should see a table of numbers (100 rows, plus one header), representing the gene expression dynamics of the transsys program in the <code>check.tra</code> file. If you
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To test whether the Python API is ready, run the

Revision as of 09:07, 26 February 2015

Pre-requisites

Before you go ahead installing transsys make sure the following dependencies are installed. Also make sure you use the development releases:

  • python
  • R
  • Open GL (If you're planning to use L-Transsys)
  • Flex
  • Bison

Download package

Installing transsys

Issue the three following commands one by one:

  • 'configure'. We recommend you use ./configure --help to see how the command works.
  • 'make'
  • 'make install'. Before you issue this command make sure the directory '/lib/R' exists in your home directory. Otherwise you need to create it and export it (e.g. export R_LIBS=${HOME}/yourdirectory/lib/R). Also, you need to install the R packahe 'xpipe' which you can find here: http://www.transsys.net/software/xpipe_0.1.tar.gz. Use 'R CMD INSTALL xpipe_0.1.tar.gz' to install the package.

A succesful installation will not show any errors.

Test

You can test whether the installation was successful by trying the command 

 transexpr testdata/check.tra

in the transsys-current directory. You should see a table of numbers (100 rows, plus one header), representing the gene expression dynamics of the transsys program in the check.tra file. If you

To test whether the Python API is ready, run the

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