Tutorial
From Transsyswiki
Contents
Basics
transsys Programs
Gene regulatory networks (GRNs) are specified by transsys programs. A transsys program consists of the keyword transsys
, followed by a name and a block containing the actual GRN specification. The block contains factor declarations and gene declarations, as described below. The block may be empty. A minimal, empty transsys program is
transsys containsnothing { }
Here, the program's name is "containsnothing
".
Factor Declarations
Gene Declarations
Introductory Example
The following is a transsys program comprised of one factor, firstfactor
and one gene, called firstgene
, which encodes that factor:
transsys firstexample { factor firstfactor { decay: 0.1; diffusibility: 1.0; } gene firstgene { promoter { constitutive: 0.2; } product { default: firstfactor; } } }
You can see a demo of this here